Source code for pytrip.utils.gd2agr

#! /usr/bin/env python
#
#    Copyright (C) 2010-2017 PyTRiP98 Developers.
#
#    This file is part of PyTRiP98.
#
#    PyTRiP98 is free software: you can redistribute it and/or modify
#    it under the terms of the GNU General Public License as published by
#    the Free Software Foundation, either version 3 of the License, or
#    (at your option) any later version.
#
#    PyTRiP98 is distributed in the hope that it will be useful,
#    but WITHOUT ANY WARRANTY; without even the implied warranty of
#    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#    GNU General Public License for more details.
#
#    You should have received a copy of the GNU General Public License
#    along with PyTRiP98.  If not, see <http://www.gnu.org/licenses/>.
#
"""
Converts GD files to xmgrace files in .agr format.
"""
import sys
import argparse
import logging

import pytrip as pt
from pytrip.utils.gd2dat import ReadGd


def main(args=sys.argv[1:]):
    """ Main function for gd2agr.
    """
    parser = argparse.ArgumentParser()
    parser.add_argument("gd_file", help="location of gd file", type=str)
    parser.add_argument("dat_file", help="location of .dat to write", type=str, nargs='?')
    parser.add_argument("-v", "--verbosity", action='count', help="increase output verbosity", default=0)
    parser.add_argument('-V', '--version', action='version', version=pt.__version__)
    args = parser.parse_args(args)

    gd_data = ReadGd(args.gd_file, let=False, exp=True, agr=True)
    gd_data.export(args.dat_file)

    return 0


if __name__ == '__main__':
    logging.basicConfig()
    sys.exit(main(sys.argv[1:]))